Index

Symbols

@canlab_dataset (module) @fmri_data (module) @fmri_mask_image (module) @fmri_model (module)

@fmridisplay (module) @image_vector (module) @region (module) @statistic_image (module)

A

add2mask() (in module ROI_drawing_tools) add_nuisance_to_SPMcfg() (in module diagnostics), [1] addblobs() (in module @fmridisplay) addbrain() (in module Visualization_functions) addbrainleft() (in module Visualization_functions) addbrainright() (in module Visualization_functions) addpoints() (in module @fmridisplay) addthreshblobs() (in module @fmridisplay)

anat_subclusters() (in module Cluster_contig_region_tools) ancova() (in module Statistics_tools) Anneal_Logit() (in module HRF_Est_Toolbox2), [1] append() (in module Misc_utilities) apply_derivative_boost() (in module Image_computation_tools) apply_mask() (in module @image_vector) applycolormap() (in module Visualization_functions) arrow() (in module Visualization_functions)

B

bar_wani() (in module Visualization_functions) barplot_colored() (in module Visualization_functions) barplot_columns() (in module Visualization_functions) barplot_columns2() (in module Visualization_functions) barplot_columns3() (in module Visualization_functions) barplot_get_within_ste() (in module Statistics_tools) barplot_grouped() (in module Visualization_functions) barplotter() (in module Visualization_functions) bars() (in module @canlab_dataset) batch_efficiency() (in module diagnostics), [1] batch_t_histograms() (in module diagnostics), [1]

bayes_get_probabilities() (in module Statistics_tools) bayes_get_probabilities_2010() (in module Statistics_tools) bayes_meta_feature_abstract() (in module Statistics_tools) BiasPowerloss() (in module diagnostics), [1] binotest() (in module Statistics_tools) binotest_dependent() (in module Statistics_tools) blank_struct() (in module Misc_utilities) Bspline() (in module Statistics_tools) build() (in module @fmri_model) build_single_trial() (in module @fmri_model)

C

cancor() (in module Statistics_tools) canlab_connectivity_predict() (in module Statistics_tools) canlab_connectivity_preproc() (in module @fmri_data) canlab_create_wm_ventricle_masks() (in module Image_computation_tools) canlab_force_directed_graph() (in module Visualization_functions) canlab_glm_getinfo() (in module GLM_Batch_tools), [1] canlab_glm_group_levels() (in module GLM_Batch_tools), [1] canlab_glm_group_levels_run1input() (in module GLM_Batch_tools), [1] canlab_glm_maskstats() (in module GLM_Batch_tools), [1] canlab_glm_publish() (in module GLM_Batch_tools), [1] canlab_glm_roistats() (in module GLM_Batch_tools), [1] canlab_glm_subject_levels() (in module GLM_Batch_tools), [1] canlab_glm_subject_levels_run1subject() (in module GLM_Batch_tools), [1] canlab_maskstats() (in module Data_extraction) canlab_qc_metrics1() (in module diagnostics), [1] canlab_results_fmridisplay() (in module Visualization_functions) center_of_mass() (in module Data_processing_tools) CERTreader() (in module Misc_utilities) change_point() (in module hewma_utility) check_cluster_data() (in module diagnostics), [1] check_extracted_data() (in module @region) check_image_filenames() (in module @image_vector) check_spm_mat() (in module Image_space_tools) check_spm_matfiles() (in module Image_space_tools) check_valid_imagename() (in module Filename_tools) checkMatlabVersion() (in module Misc_utilities) circle() (in module Misc_utilities) cl_ext_3dClustSim() (in module Image_thresholding) cl_ext_make_resid() (in module Image_thresholding) cl_ext_spm_grf() (in module Image_thresholding) cl_ext_spm_spm() (in module Image_thresholding) cl_line_plots() (in module Visualization_functions) cl_overlap() (in module Visualization_functions) classify_bayes() (in module Statistics_tools) classify_choose_most_likely() (in module Statistics_tools) classify_naive_bayes() (in module Statistics_tools) classify_naive_bayes_2010() (in module Statistics_tools) classify_naive_bayes_objfun() (in module Statistics_tools) classify_viz_regions() (in module Statistics_tools) close_non_spm_graphics_figures() (in module Visualization_functions) cluster2region() (in module Cluster_contig_region_tools) cluster2subclusters() (in module Cluster_contig_region_tools) cluster_barplot() (in module Visualization_functions) cluster_close_enough() (in module Cluster_contig_region_tools) Cluster_contig_region_tools (module) cluster_cutaways() (in module Visualization_functions) cluster_export_pngs() (in module Cluster_contig_region_tools) cluster_find_index() (in module Cluster_contig_region_tools) cluster_image_shape() (in module Visualization_functions) cluster_image_sphere() (in module Visualization_functions) cluster_interp() (in module Cluster_contig_region_tools)

cluster_intersection() (in module Cluster_contig_region_tools) cluster_kmeans_parcel() (in module hewma_utility) cluster_local_maxima() (in module Cluster_contig_region_tools) cluster_manova() (in module peak_coordinates) cluster_orthviews() (in module Visualization_functions) cluster_orthviews_classes() (in module Visualization_functions) cluster_orthviews_montage() (in module Visualization_functions) cluster_orthviews_overlap() (in module Visualization_functions) cluster_orthviews_overlap2() (in module Visualization_functions) cluster_orthviews_overlap_3colors() (in module Visualization_functions) cluster_orthviews_showcenters() (in module Visualization_functions) cluster_princomp() (in module Parcellation_tools) cluster_set_intersection() (in module Cluster_contig_region_tools) cluster_surf() (in module Visualization_functions) cluster_surf_batch() (in module Visualization_functions) cluster_surf_batch2() (in module Visualization_functions) cluster_table() (in module Cluster_contig_region_tools) cluster_table_successive_threshold() (in module Cluster_contig_region_tools) cluster_tmask() (in module Data_extraction) clusters2CLU() (in module Cluster_contig_region_tools) clusters2mask() (in module Cluster_contig_region_tools) clusters2mask2011() (in module fmridisplay_helper_functions) clusters2roimask() (in module ROI_drawing_tools) clusterSizeMask() (in module Image_thresholding) cnt_runs() (in module hewma_utility) colormap_tor() (in module Visualization_functions) combine_structs() (in module Misc_utilities) compare_filtered_t() (in module Visualization_functions) compare_slice() (in module Visualization_functions) compare_space() (in module @image_vector) compare_subjects() (in module diagnostics), [1] compare_subjects256() (in module diagnostics), [1] concatenate() (in module @canlab_dataset) condf2indic() (in module Misc_utilities) conf_region() (in module Visualization_functions) conjunction() (in module @statistic_image) ContinuousAccuracy() (in module Statistics_tools) contrast_code() (in module Statistics_tools) convert2mask() (in module @statistic_image) copy_image_files() (in module Filename_tools) correl_compare_dep() (in module Statistics_tools) correl_compare_dep_permtest() (in module Statistics_tools) correl_compare_dep_search() (in module Statistics_tools) correl_compare_indep() (in module Statistics_tools) correl_compare_indep_inputr() (in module Statistics_tools) correl_compare_permute() (in module Statistics_tools) correlation() (in module Statistics_tools) correlation_fast_series() (in module Statistics_tools) create() (in module @fmri_data) create_figure() (in module Visualization_functions) create_orthogonal_contrast_set() (in module Statistics_tools)

D

Data_extraction (module) Data_processing_tools (module) define_sampling_space() (in module fmridisplay_helper_functions) delete_ana_imgs() (in module Filename_tools) depfun_aggregate() (in module Misc_utilities) Det_Logit() (in module HRF_Est_Toolbox2), [1] detransition() (in module Data_processing_tools) diagnostics (module), [1] dice_coeff_image() (in module Statistics_tools)

dicom_tarzip() (in module Filename_tools) display_slice() (in module fmridisplay_helper_functions) displayme() (in module diagnostics), [1] distance() (in module Misc_utilities) distance_euclid() (in module Misc_utilities) doquality() (in module Statistics_tools) downsample_scnlab() (in module Data_processing_tools) draw_anatomical_roi_2008() (in module ROI_drawing_tools)

E

ellipse() (in module diagnostics), [1] erase_and_display() (in module Misc_utilities) erase_string() (in module Misc_utilities) errorbar_horizontal() (in module Visualization_functions) errorbar_width() (in module Visualization_functions) escapeForShell() (in module Filename_tools) ewma5() (in module hewma_utility) expand_4d_filenames() (in module Filename_tools) explode() (in module Misc_utilities)

extract_contrast_data() (in module Data_extraction) extract_data() (in module @region) extract_from_rois() (in module Data_extraction) extract_gray_white_csf() (in module @image_vector) extract_image_data() (in module Data_extraction) extract_ind_peak() (in module peak_coordinates) extract_indiv_peak_data() (in module Data_extraction) extract_roi_averages() (in module @fmri_data) (in module @image_vector)

F

F_test_full_vs_red() (in module Statistics_tools) F_test_no_intercept() (in module Statistics_tools) fast_conv_fft() (in module Misc_utilities) fastmontage() (in module @image_vector) FDR() (in module Image_thresholding) fft_calc() (in module diagnostics), [1] fft_plot_scnlab() (in module Data_processing_tools) filename_get_new_root_dir() (in module Filename_tools) Filename_tools (module) fill_area_around_points() (in module Visualization_functions) filterAdjust() (in module Data_processing_tools) fir2htw2() (in module Data_processing_tools)

fisherp() (in module Image_computation_tools) fisherz() (in module Statistics_tools) Fit_Canonical_HRF() (in module HRF_Est_Toolbox2), [1] fit_gls() (in module Statistics_tools) fit_gls_brain() (in module Statistics_tools) Fit_Logit2() (in module HRF_Est_Toolbox2), [1] Fit_sFIR() (in module HRF_Est_Toolbox2), [1] flip() (in module @image_vector) flip_endianness() (in module Index_image_manip_tools) fmri_mask_thresh_canlab() (in module diagnostics), [1] fmri_spline_basis() (in module Model_building_tools) fmridisplay_helper_functions (module)

G

Gaussian_mix() (in module hewma_utility) get_ax_slice() (in module hewma_utility) get_cluster_volume() (in module Visualization_functions) get_condition_assignments() (in module @fmri_model) get_filename() (in module diagnostics), [1] get_filename2() (in module diagnostics), [1] get_first_help_lines() (in module Misc_utilities) Get_Logit() (in module HRF_Est_Toolbox2), [1] get_mask_vol() (in module Image_computation_tools) get_max_t() (in module hewma_utility) get_parameters2() (in module HRF_Est_Toolbox2), [1] get_session_X() (in module @fmri_model) get_snr() (in module Data_processing_tools) get_var() (in module @canlab_dataset)

get_wh_image() (in module @image_vector) getfullpath() (in module Filename_tools) getmeanquality() (in module Statistics_tools) getPredictors() (in module Model_building_tools) getRandom() (in module Misc_utilities) getVertexColors() (in module Visualization_functions) glassbrain_avi() (in module Visualization_functions) glm() (in module @canlab_dataset) GLM_Batch_tools (module), [1] glm_multilevel() (in module @canlab_dataset) glmfit_general() (in module Statistics_tools) glmfit_multilevel() (in module Statistics_tools) glmfit_multilevel_varexplained() (in module Statistics_tools)

H

hewma2() (in module hewma_utility) hewma2_plot() (in module hewma_utility) hewma_extract_voxel() (in module hewma_utility) hewma_from_raw_timeseries() (in module hewma_utility) hewma_gui() (in module hewma_utility) hewma_plot_bivariate() (in module hewma_utility) hewma_plot_coord_btnupfcn() (in module hewma_utility) hewma_plot_cpmap() (in module hewma_utility) hewma_plot_runlen() (in module hewma_utility) hewma_save_timeseries() (in module hewma_utility)

hewma_utility (module) hist2() (in module diagnostics), [1] histogram() (in module @canlab_dataset) (in module @image_vector) history() (in module @image_vector) HMHRFest() (in module HRF_Est_Toolbox2), [1] horzcat() (in module @fmri_data) (in module @image_vector) HRF_Est_Toolbox2 (module), [1] hrf_fit() (in module @fmri_data) hrf_fit_one_voxel() (in module HRF_Est_Toolbox2), [1] htw_from_fit() (in module Data_processing_tools)

I

ica() (in module @image_vector) ICC() (in module Statistics_tools) ideal_deconv6() (in module Model_building_tools) iimg_check_volinfo() (in module Index_image_manip_tools) iimg_cluster_extent() (in module Index_image_manip_tools) iimg_cluster_index() (in module Index_image_manip_tools) iimg_cluster_intersect() (in module Index_image_manip_tools) iimg_cluster_prune() (in module Index_image_manip_tools) iimg_clusters2indx() (in module Index_image_manip_tools) iimg_indx2contiguousxyz() (in module Index_image_manip_tools) iimg_intersection() (in module Index_image_manip_tools) iimg_make_sure_indx() (in module Index_image_manip_tools) iimg_mask() (in module Index_image_manip_tools) iimg_multi_threshold() (in module Index_image_manip_tools) iimg_princomp() (in module Index_image_manip_tools) iimg_princomp_display() (in module Index_image_manip_tools) iimg_read_img() (in module Index_image_manip_tools) iimg_read_vols() (in module Index_image_manip_tools) iimg_reconstruct_3dvol() (in module Index_image_manip_tools) iimg_reconstruct_vols() (in module Index_image_manip_tools) iimg_reslice() (in module Index_image_manip_tools) iimg_smooth_3d() (in module Index_image_manip_tools) iimg_sphere_timeseries() (in module Index_image_manip_tools) iimg_stouffer() (in module Index_image_manip_tools) iimg_threshold() (in module Index_image_manip_tools) iimg_weighted_ttest() (in module Index_image_manip_tools) iimg_write_images() (in module Index_image_manip_tools)

iimg_xyz2indx() (in module Index_image_manip_tools) iimg_xyz2spheres() (in module Index_image_manip_tools) ilogit() (in module HRF_Est_Toolbox2), [1] image2clusters() (in module Cluster_contig_region_tools) image2coordinates() (in module peak_coordinates) Image_computation_tools (module) image_eval_function() (in module Image_computation_tools) image_eval_function_multisubj() (in module Image_computation_tools) image_histogram() (in module Visualization_functions) image_histogram1d() (in module Image_computation_tools) image_intensity_histograms() (in module diagnostics), [1] image_math() (in module @image_vector) image_similarity_plot() (in module @image_vector) image_similarity_plot_bucknermaps() (in module @image_vector) Image_space_tools (module) Image_thresholding (module) imageCluster() (in module Visualization_functions) imageCluster_block() (in module Visualization_functions) img2voxel() (in module Image_space_tools) img_hist() (in module diagnostics), [1] img_hist2() (in module diagnostics), [1] implode() (in module Misc_utilities) inconsistent() (in module Parcellation_tools) Index_image_manip_tools (module) intercept() (in module Statistics_tools) intercept_model() (in module Model_building_tools) interpolate() (in module @image_vector)

J

joint_hist() (in module diagnostics), [1]

L

legend() (in module @fmridisplay) line_plot_multisubject() (in module Visualization_functions) linear_detrending() (in module hewma_utility)

lineplot_columns() (in module Visualization_functions) loess_multilevel() (in module Statistics_tools) luisFilter() (in module Data_processing_tools)

M

make3Davi() (in module Visualization_functions) make3Davi_uncompressed() (in module Visualization_functions) make_conv_mtx() (in module diagnostics), [1] make_figure_into_orthviews() (in module Visualization_functions) makelegend() (in module Visualization_functions) map_data_to_colormap() (in module Visualization_functions) map_to_world_space() (in module fmridisplay_helper_functions) mask2clusters() (in module Cluster_contig_region_tools) mask2struct() (in module Cluster_contig_region_tools) mask2surface() (in module Visualization_functions) mask2voxel() (in module Image_space_tools) mask_create_from_image_set() (in module Image_computation_tools) mask_create_results_mask() (in module Image_computation_tools) mask_fisher() (in module Image_computation_tools) mask_image() (in module Image_computation_tools) mask_intersection() (in module Image_computation_tools) mask_intersection2() (in module Image_computation_tools) mask_princomp() (in module Parcellation_tools) mask_stouffer() (in module Image_computation_tools) mask_union() (in module Image_computation_tools) matrix_direct_effects() (in module Statistics_tools) matrix_direct_effects_ridge() (in module Statistics_tools) matrix_eval_function() (in module Statistics_tools) mdsfig() (in module Visualization_functions) mdsfig_3d() (in module Visualization_functions) mea_visualise() (in module Visualization_functions) mean() (in module @image_vector)

mediation() (in module @canlab_dataset) merge() (in module @region) merge_clusters() (in module Cluster_contig_region_tools) merge_nearby_clusters() (in module Cluster_contig_region_tools) minus() (in module @image_vector) Misc_utilities (module) mni2tal() (in module Image_space_tools) Model_building_tools (module) modifiedconv() (in module Model_building_tools) monotonic_regression() (in module Statistics_tools) montage() (in module @fmridisplay) (in module @image_vector) montage_clusters() (in module Visualization_functions) montage_clusters_maxslice() (in module Visualization_functions) montage_clusters_medial() (in module Visualization_functions) montage_clusters_points() (in module Visualization_functions) montage_clusters_text() (in module Visualization_functions) montage_clusters_text2() (in module Visualization_functions) montage_image_Worsley() (in module Visualization_functions) movie_of_slice_timeseries() (in module Visualization_functions) movie_stillframes() (in module Visualization_functions) moving_average() (in module Statistics_tools) multi_threshold() (in module @statistic_image) (in module Visualization_functions) multivar_dist() (in module diagnostics), [1] mvroi_mdsfig_plot2() (in module Visualization_functions) mvroi_mdsfig_plot_sepstates() (in module Visualization_functions) mvroi_mdsfig_plugin2() (in module Visualization_functions) mvroi_plot_firs() (in module Visualization_functions)

N

naninsert() (in module Misc_utilities) nanremove() (in module Misc_utilities) nmdsfig() (in module Visualization_functions) nmdsfig1D() (in module Visualization_functions) nmdsfig_fill() (in module Visualization_functions) nmdsfig_legend() (in module Visualization_functions) noise_arp() (in module Statistics_tools)

nonlin_fit() (in module Statistics_tools) nonlin_param_mod_brain() (in module Statistics_tools) nonlin_param_modulator() (in module Statistics_tools) nonlin_parammod_predfun() (in module Statistics_tools) nuisance_cov_estimates() (in module Data_processing_tools) nums_from_text() (in module Filename_tools)

O

oneinsert() (in module Misc_utilities) onsets2delta() (in module Model_building_tools) onsets2dx() (in module Model_building_tools) onsets2fmridesign() (in module Model_building_tools) onsets2parametric_mod_X() (in module Model_building_tools) optimize_rand_search() (in module OptimizeDesign11), [1]

OptimizeDesign11 (module), [1] optimizeGA() (in module OptimizeDesign11), [1] optimizeGA_epochs() (in module OptimizeDesign11), [1] orthogonalize() (in module diagnostics), [1] orthviews() (in module @image_vector) (in module @statistic_image) orthviews_multiple_objs() (in module Misc_utilities)

P

pad() (in module Misc_utilities) padwithnan() (in module Misc_utilities) pairwise_diffs() (in module Statistics_tools) parcel_cl_nmds() (in module Parcellation_tools) parcel_cl_nmds_plots() (in module Parcellation_tools) parcel_clusters() (in module Parcellation_tools) parcel_complete_sets() (in module Parcellation_tools) parcel_images() (in module Parcellation_tools) Parcellation_tools (module) parse_char_to_cell() (in module Misc_utilities) parse_edat_txt() (in module Misc_utilities) partition_variables_indevel() (in module Statistics_tools) peak_coordinates (module) percent_sig_image() (in module Image_computation_tools) permute_setupperms() (in module Statistics_tools) permute_signtest() (in module Statistics_tools) plot() (in module @fmri_data) (in module @fmri_model) plot3d() (in module Visualization_functions) plot_correlation() (in module Visualization_functions) plot_correlation_samefig() (in module Visualization_functions) plot_current_orthviews_coord() (in module @image_vector) plot_dx_hrfs() (in module Visualization_functions) plot_ellipse() (in module Visualization_functions) plot_error() (in module Visualization_functions) plot_horizontal_line() (in module Visualization_functions)

plot_hrf_model_fit() (in module Visualization_functions) plot_ideal_deconv5() (in module Model_building_tools) plot_joint_hist_contour() (in module Visualization_functions) plot_matrix_cols() (in module Visualization_functions) plot_var() (in module @canlab_dataset) plot_vertical_line() (in module Visualization_functions) plotDesign() (in module Visualization_functions) plssquash() (in module Statistics_tools) plus() (in module @image_vector) posneg_separate() (in module @region) power() (in module @image_vector) power_from_variance() (in module diagnostics), [1] power_loss() (in module diagnostics), [1] PowerLoss() (in module HRF_Est_Toolbox2), [1] predict() (in module @fmri_data) predict_test_suite() (in module @fmri_data) preprocess() (in module @image_vector) princomp_largedata() (in module Statistics_tools) print_matrix() (in module Misc_utilities) print_summary() (in module @canlab_dataset) progressbar() (in module Misc_utilities) prplot() (in module Visualization_functions) prplot_multilevel() (in module Statistics_tools) publish_scn_session_spike_id() (in module diagnostics), [1]

Q

qchist() (in module diagnostics), [1]

R

r2z() (in module Statistics_tools) read_edat_output_2008() (in module Misc_utilities) read_excel() (in module Filename_tools) read_from_excel() (in module @canlab_dataset) read_from_file() (in module @image_vector) read_hdr() (in module Data_extraction) readim2() (in module Data_extraction) rebuild_volinfo_from_dat() (in module @image_vector) reconstruct_image() (in module @image_vector) region2imagevec() (in module @region) region2imagevec2tmp() (in module @region) region2struct() (in module @region) regress() (in module @fmri_data) regress_best_subsets_ga() (in module Statistics_tools) remove_disdaq_vols() (in module Filename_tools) remove_empty() (in module @image_vector) rename_lowercase() (in module Filename_tools) rename_uppercase() (in module Filename_tools) render_blobs() (in module fmridisplay_helper_functions) renderCluster_ui() (in module Visualization_functions) renderCluster_ui4() (in module Visualization_functions) reparse_contiguous() (in module @image_vector) (in module @statistic_image) reparse_continguous() (in module @region) repeated_ancova() (in module Statistics_tools)

replace_basis_set() (in module @fmri_model) replace_empty() (in module @image_vector) resample_scnlab() (in module Data_processing_tools) resample_space() (in module @image_vector) (in module fmridisplay_helper_functions) resample_time() (in module @image_vector) resample_to_image_space() (in module @fmri_mask_image) rescale() (in module @fmri_data) reset_SPMcfg() (in module diagnostics), [1] ResidScan() (in module diagnostics), [1] (in module HRF_Est_Toolbox2), [1] reslice_imgs() (in module Image_computation_tools) reverse_mask() (in module Image_computation_tools) rmanova2() (in module Statistics_tools) robust_reg_pooled() (in module Statistics_tools) robustcsvread() (in module Misc_utilities) robustfit() (in module @fmri_model) roc_boot() (in module Statistics_tools) roc_calc() (in module Statistics_tools) roc_plot() (in module Statistics_tools) roi_contour_map() (in module Visualization_functions) ROI_drawing_tools (module) rotate_to_pca() (in module @fmri_model) rsquare_calc() (in module Statistics_tools) rsquare_multiple_regions_multilevel() (in module Statistics_tools)

S

sagg_slice_movie() (in module @image_vector) saveplots() (in module @fmri_data) scale() (in module Data_processing_tools) scale_imgs_by_csf() (in module diagnostics), [1] scan_get_files() (in module Filename_tools) scattermatrix() (in module @canlab_dataset) scatterplot() (in module @canlab_dataset) scn_component_rsquare() (in module diagnostics), [1] scn_export_papersetup() (in module Visualization_functions) scn_get_datetime() (in module Misc_utilities) scn_map_image() (in module Image_space_tools) scn_mat_conform() (in module Misc_utilities) scn_resample_voxel_size() (in module Image_space_tools) scn_session_spike_id() (in module diagnostics), [1] scn_spm_choose_hpfilter() (in module diagnostics), [1] scn_spm_design_check() (in module diagnostics), [1] scn_spm_get_events_of_interest() (in module diagnostics), [1] scn_standard_colors() (in module Visualization_functions) scn_stats_helper_functions() (in module Statistics_tools) scn_write_plane() (in module Image_computation_tools) scnlab_filter_fmri_data() (in module Data_processing_tools) scnlab_norm_check() (in module diagnostics), [1] scnlab_norm_check3() (in module diagnostics), [1] scnlab_outlier_id() (in module Data_processing_tools) scnlab_pca_check1() (in module diagnostics), [1] sdt_A() (in module Statistics_tools) search_struct_fields() (in module Misc_utilities) searchlight() (in module @image_vector) searchlight_applymask() (in module Statistics_tools) searchlight_applymask_collate() (in module Statistics_tools) searchlight_correlation() (in module Statistics_tools) searchlight_disti() (in module Statistics_tools) searchlight_dream() (in module Statistics_tools) searchlight_saveresults() (in module Statistics_tools) select_one_image() (in module @statistic_image) selective_average() (in module Data_processing_tools) selective_average_group() (in module Data_processing_tools) selective_average_interactive_view_init() (in module Visualization_functions) sepplot() (in module Visualization_functions) shepardplot() (in module Visualization_functions)

shift_correl() (in module Statistics_tools) shift_signal() (in module Statistics_tools) signtest() (in module @fmri_data) signtest_matrix() (in module Statistics_tools) single_trial_estimates() (in module @fmri_model) slices() (in module @image_vector) smooth_timeseries() (in module Data_processing_tools) sort_image_filenames() (in module Filename_tools) spatial_contrast() (in module peak_coordinates) sphere_mask() (in module ROI_drawing_tools) sphere_roi_tool() (in module Visualization_functions) splineDetrend() (in module Data_processing_tools) splinetrim() (in module Data_processing_tools) spm2canlab_dataset() (in module @canlab_dataset) spm_general_hist() (in module diagnostics), [1] spm_mat2batchinput() (in module Model_building_tools) spm_orthviews_change_colormap() (in module Visualization_functions) spm_orthviews_hotcool_colormap() (in module Visualization_functions) spm_orthviews_name_axis() (in module Visualization_functions) spm_orthviews_showposition() (in module Visualization_functions) spm_orthviews_white_background() (in module Visualization_functions) spm_ov_black2white() (in module Visualization_functions) spm_rfx_hist() (in module diagnostics), [1] standardMRIlighting() (in module Visualization_functions) Statistics_tools (module) ste() (in module Statistics_tools) stepwise_tor() (in module Statistics_tools) stouffer() (in module Statistics_tools) strip_path_dirs() (in module Misc_utilities) strip_svn_dirs() (in module Misc_utilities) strrep_recurse() (in module Misc_utilities) struct2yaml() (in module diagnostics), [1] struct_strrep() (in module Misc_utilities) subclusters_from_local_max() (in module Cluster_contig_region_tools) subdivide_by_atlas() (in module @region) subdivide_by_local_max() (in module @region) subset_indicator_matrix() (in module Statistics_tools) surf_plot_tor() (in module Visualization_functions) surface() (in module @fmridisplay) (in module @image_vector) (in module @region) surface_cutaway() (in module Visualization_functions)

T

t_test2() (in module Statistics_tools) table() (in module @region) tal2mni() (in module Image_space_tools) tal2vox() (in module Image_space_tools) talairach_clusters() (in module Visualization_functions) testclustnew() (in module Statistics_tools) threshold() (in module @image_vector) (in module @statistic_image) threshold_imgs() (in module Image_thresholding) time_varying_estimate() (in module Statistics_tools) timeseries_btwngroups_plot() (in module hewma_utility) timeseries_extract_slice() (in module Data_extraction) timeseries_mc_pvalue() (in module hewma_utility) timeseries_prplot() (in module Visualization_functions) tor_3d() (in module Visualization_functions) tor_extract_rois() (in module Data_extraction) tor_fill_steplot() (in module Visualization_functions) tor_ga() (in module Misc_utilities) tor_get_physio() (in module diagnostics), [1]

tor_ihb_GetClusters() (in module Visualization_functions) tor_ihb_GetClusterSet() (in module Visualization_functions) tor_ihb_TalSpace() (in module Visualization_functions) tor_ihb_UpdateClusterTalVoxSize() (in module Visualization_functions) tor_make_deconv_mtx3() (in module Model_building_tools) tor_polar_plot() (in module Visualization_functions) tor_spm_mean_ui() (in module Image_computation_tools) transform_coordinates() (in module Image_space_tools) transparency_change() (in module @fmridisplay) trim_mask() (in module @image_vector) trimts() (in module Data_processing_tools) tscv() (in module Statistics_tools) tsquaretest() (in module Statistics_tools) ttest() (in module @fmri_data) ttest2() (in module @canlab_dataset) ttest2_printout() (in module Statistics_tools) ttest3d() (in module Statistics_tools)

U

union() (in module @image_vector)

use_spm_filter() (in module Data_processing_tools)

V

var_prctile() (in module Statistics_tools) violinplot() (in module Visualization_functions) Visualization_functions (module)

voxel2mask() (in module Image_space_tools) voxel2mm() (in module Image_space_tools)

W

wani_pie() (in module Visualization_functions) wb_hewma_shell() (in module hewma_utility) weighted_glmfit() (in module Statistics_tools) weighted_reg() (in module hewma_utility) weighted_reg_old2() (in module hewma_utility)

weighted_reg_oldglmfit_old() (in module hewma_utility) whole_brain_ewma() (in module hewma_utility) windsorize() (in module @fmri_data) write() (in module @image_vector) write_text() (in module @canlab_dataset)

X

xcorr_multisubject() (in module Statistics_tools) xcorr_xy_multisubject() (in module Statistics_tools)

xval_lasso_brain_permutation_histogram() (in module Visualization_functions) xyz2clusters() (in module Cluster_contig_region_tools)

Z

zero_crossing() (in module hewma_utility)

zeroinsert() (in module Misc_utilities)